|Novel Exons:||the 1,172 novel exons discussed in the paper are added by 855 trapclusters which can be downloaded here as FASTA and GFF|
|Novel Genes:||the 8,420 novel trapcluster-genes discussed in the paper can be downloaded here as FASTA and GFF|
|TrapCLusters:||the complete dataset of 31,854 trapclusters can be downloaded here as FASTA and GFF|
|All the data are referred to the release of the mouse genome NCBIM34 (May 2005 Assembly) and can be visualized as DAS tracks, using the DAS server at http://das.tigem.it/cgi-bin/dashome/das on the Ensembl 32 version of the mouse genome.
Use the following instructions to add a das track in the Ensembl genome browser:
|Goto a contigview page of your region of interest.|
|In the "Detailed view", click the "DAS sources menu"|
|Choose "Manage sources", and then click "Add data source".|
|Click on "more", type "das.tigem.it/cgi-bin/dashome/das" in the URL box and then click on the "DSN list" button.|
|Scroll down the "Data source" menu and click your choice. At the time of writing the four choices are:
* trap_das_32_34, to visualize the 161,437 mapped traps
* trapclusters_das_32_34, to visualize the 31,854 trapclusters
* tcl_novel_exons_das_32_34, to visualize the 855 trapclusters which add 1,172 novel exons to known RefSeq genes
* tclg_das_32_34, to visualize the 8,420 novel trapcluster-genes.
|Scroll to the bottom of the list and click "Attach DAS".|
|Click "Reload" or "Refresh" in your browser to view the annotation track.|