TrapCLuster-Gene Report for TCLG2221

Internal Id  
2221
 
Accession  
TCLG2221
 
Sequence  
CTCAGGTGGGCGCCTTCCACACCTTTCTCCCCGTGGCGGCGCCAGCAGCTCCGTGCAGTGGTTCTGGAGGTGAGAAATGA
 
ACCCTGATGCTCTGGCCTACTTGGGCTACAGAAAAGATGTGAGCGCTCCTTTGCTCAAGAGCAAGCAGACACAAGTGTCA
 
GGAACAAGAAGATGGTGCGACGACCCCACGCCCTCCATCAGCCTTCTAGCCCAGAGGGCTCCCACGCACAGGCTCTGGAC
 
CCTAGTGCTTGCCCGGACCCCAGCATCAGAGCTCGGCCAGACCAGAATGCAATAAATAcggtgctagctttccgacgtgg
 
tctgcggtactacaggttggtccacacagaatctcttcaagggcggagcaccagagtcctcctcttcctcagtggtctgg
 
aagtagcaggacagggtgtgatgagccaccccgagcagccctgcccattcaccacactgcagcctgcagcctgcccTTAT
 
CATATATTTTTAATAAACTGATTATTATGTGTGCACAGTGGGGGAGGGGCCCATGTGAAGATTAAAAGATAAAGCTCCCT
 
CCCTCCGCCTTCA
 
RNA length  
573
 
Type  
antisense
 
Overlapping 
 
Novel only  
1
 
RT-PCR confirmed  
1
 
LORF Length  
109
 
LORF-Blastp Result  
0
 
Go To Ensembl 
Go To UCSC 

Internal Id  Chromosome  Start  End  Strand  Mouse Release  
1160
 		 
5
 		 
134185964
 		 
134194757
 		 
-1
 		 
NCBIM34
 



Longest ORF Translation Length Strand 
ATGGTGCGACGACCCCACGCCCTCCATCAGCCTTCTAGCCCAGAGGGCTC
CCACGCACAGGCTCTGGACCCTAGTGCTTGCCCGGACCCCAGCATCAGAG
CTCGGCCAGACCAGAATGCAATAAATAcggtgctagctttccgacgtggt
ctgcggtactacaggttggtccacacagaatctcttcaagggcggagcac
cagagtcctcctcttcctcagtggtctggaagtagcaggacagggtgtga
tgagccaccccgagcagccctgcccattcaccacactgcagcctgcagcc
tgcccTTATCATATATTTTTAATAAACT
 
MVRRPHALHQPSSPEGSHAQALDPSACPDPSIRARPDQNAINTVLAFRRG
LRYYRLVHTESLQGRSTRVLLFLSGLEVAGQGVMSHPEQPCPFTTLQPAA
CPYHIFLIN
 
109
 
+

BLASTP Hit ID (ORF) Description Score Start End Frac Aligned Query Num Hsps Frac Identical Length   
No BLASTP result for Longest-ORF!

TrapCLuster TCL23247
Public Clones  
Private Clones OST985 (lexicon) OST140180 (lexicon)
 
TrapCLuster TCL23248
Public Clones  
Private Clones OST30955 (lexicon) OST346928 (lexicon) OST48322 (lexicon)
OST246582 (lexicon) OST240348 (lexicon) OST334877 (lexicon)
OST205424 (lexicon) OST307696 (lexicon) OST296384 (lexicon)
OST326327 (lexicon) OST172113 (lexicon) OST340624 (lexicon)
OST172114 (lexicon) OST88844 (lexicon) OST304350 (lexicon)
OST345001 (lexicon) OST334073 (lexicon) OST425735 (lexicon)
OST88666 (lexicon) OST401554 (lexicon)