TrapCLuster-Gene Report for TCLG2538

Internal Id  
2538
 
Accession  
TCLG2538
 
Sequence  
CTGACATGACATGGTACCTGCCTCTGGAACAAAGCCAGCAAAACGggacctgaaatagggactgaccaggaagaggagca
 
gaaacgcaggatgcaggatctacagccatcagcatgagtttagtgctgaaagaatgcaccctgacaagacagagcagcaa
 
tgcagttcttgtcagatctccaggtcaaagcgacctgtgtaaccttgtgtcacatccccagatttaatccaaagcctatg
 
aagtactgttatgctgctattgtctgaagctagccgtcactCAGCGATTGCCTCCTGCATGGCTGGTGACATCATCTGGA
 
TGGGTCTGGGGAGCTCCAGCTTCAGAGCCCAGCTCAGCACCAGTGAGGAGAAGCACTTGCCCAGCCCCTGACTAAGGTTT
 
CTCATGTCACCACCCAAATGCTTGTCTGTCCTGTGTGAAGACACTGCAGATGTGTTTTTCTCTGAGAGCCCTAGGTGGCC
 
CTGCACATTCATTTGTGATACTCGAGTTTCTATGGGGTGGACCAGAGACTGGGCACCTCGTTCCTCCAGCGTGAGCAGAG
 
CCCTCCAGGGTGCTCTGTCTGCAGctcttcttccagctcccaggtcccgagacccccaaagatggcgagcagggccactg
 
tccgtacctttcctttctgaggcacagaactctggaagaactaaagttgcagctaaaccaatgacaaagctgttctcaaa
 
ggctttaatggtggacaatctgcatcgcaatgcgctcatctgcatggctcggaacaatgggaaatatgtaaggaggtctg
 
tggtgCCTCAAAAACTTATTTGGCTAACAATAAGAACTGAGAGAGAAGAAAACAATGCAGTCCGTGAGCCTGACCTGGAA
 
TGGTCTTCAGCATATTTTTATATGACAATGTCTATGTGctcccactcccgaaagtctgcagagaggctgctccgtcactt
 
catgctgctttcactaggacacactgcgtgggacaacctgtctcagaggttgattttctccttctaccacggcttagtga
 
caagcaactccattctccaagccagctggccggctctcctttcctttttgaaatccctcattattgtctttttcccctct
 
gtatactcctagcagtatgacctccataggtcggctggcaggatgaggcgctagattcaatggtgtctctaaggaa
 
RNA length  
1196
 
Type  
antisense
 
Overlapping 
 
Novel only  
1
 
RT-PCR confirmed  
1
 
LORF Length  
242
 
LORF-Blastp Result  
0
 
Go To Ensembl 
Go To UCSC 

Internal Id  Chromosome  Start  End  Strand  Mouse Release  
1844
 		 
8
 		 
11013821
 		 
11081038
 		 
1
 		 
NCBIM34
 



Longest ORF Translation Length Strand 
ATGTCACCACCCAAATGCTTGTCTGTCCTGTGTGAAGACACTGCAGATGT
GTTTTTCTCTGAGAGCCCTAGGTGGCCCTGCACATTCATTTGTGATACTC
GAGTTTCTATGGGGTGGACCAGAGACTGGGCACCTCGTTCCTCCAGCGTG
AGCAGAGCCCTCCAGGGTGCTCTGTCTGCAGctcttcttccagctcccag
gtcccgagacccccaaagatggcgagcagggccactgtccgtacctttcc
tttctgaggcacagaactctggaagaactaaagttgcagctaaaccaatg
acaaagctgttctcaaaggctttaatggtggacaatctgcatcgcaatgc
gctcatctgcatggctcggaacaatgggaaatatgtaaggaggtctgtgg
tgCCTCAAAAACTTATTTGGCTAACAATAAGAACTGAGAGAGAAGAAAAC
AATGCAGTCCGTGAGCCTGACCTGGAATGGTCTTCAGCATATTTTTATAT
GACAATGTCTATGTGctcccactcccgaaagtctgcagagaggctgctcc
gtcacttcatgctgctttcactaggacacactgcgtgggacaacctgtct
cagaggttgattttctccttctaccacggcttagtgacaagcaactccat
tctccaagccagctggccggctctcctttcctttttgaaatccctcatta
ttgtctttttcccctctgtatactcct
 
MSPPKCLSVLCEDTADVFFSESPRWPCTFICDTRVSMGWTRDWAPRSSSV
SRALQGALSAALLPAPRSRDPQRWRAGPLSVPFLSEAQNSGRTKVAAKPM
TKLFSKALMVDNLHRNALICMARNNGKYVRRSVVPQKLIWLTIRTEREEN
NAVREPDLEWSSAYFYMTMSMCSHSRKSAERLLRHFMLLSLGHTAWDNLS
QRLIFSFYHGLVTSNSILQASWPALLSFLKSLIIVFFPSVYS
 
242
 
+

BLASTP Hit ID (ORF) Description Score Start End Frac Aligned Query Num Hsps Frac Identical Length   
No BLASTP result for Longest-ORF!

TrapCLuster TCL27057
Public Clones  
Private Clones OST258389 (lexicon) OST259348 (lexicon) OST259395 (lexicon)
OST35041 (lexicon) OST266710 (lexicon) OST257840 (lexicon)
OST259700 (lexicon) OST259162 (lexicon) OST266716 (lexicon)
OST258393 (lexicon) OST259159 (lexicon) OST259918 (lexicon)
 
TrapCLuster TCL27058
Public Clones  
Private Clones OST300468 (lexicon) OST276970 (lexicon) OST378055 (lexicon)
 
TrapCLuster TCL27059
Public Clones CMHD-GT_181G5-3 (cmhd)
Private Clones  
 
TrapCLuster TCL27060
Public Clones  
Private Clones OST194335 (lexicon)