TrapCLuster-Gene Report for TCLG4020

Internal Id 
4020
 
Accession 
TCLG4020
 
Sequence 
GCAAACCAAGATGGAGTATGATTGGAAACCTGATGAGCAGGGCTTCAGCAGATCCTGCAGCTGCTCAAGGAGTCCCAGTC
CCCAGACACCACCATCCAGAGGACCGTGCAACAAAAACTGGAACAACTCAATCAATATCCAGATTTTAACAACTACTTGA
TTTTTGTTCTTACAAAATTAAAATCTGAAGATGAGCCCACACGGTCATTGAGCGGTCTGATCTTGAAGAACAATGTGAAA
GCTCATTTTCAGAACTTCCCAAATGGTGTGACAGACTTCATCAAGAGTGAATGTCTAgagtgaatgtctaaataacattg
gggactcctctccgttgatcagagccactgtcggtattttaattacaaccatagcctccaagggagagctgcagaattgg
cctgatctcttaccaaacctctgtagcctgctggattccgaagactacaacacttgtgagggagccttcggtgcccttca
gaagatatgtgaggactctgcagagattttagacagtgatgtcttagatcgccctctcaacatcatgatccccaagtttt
tacagtttttcaagcacaggagtcccaaaataaggtctcgtgctgttgcatgtgtcaatcagttcatcatcagccggacc
caggcgctcatgctgcacatggattccttcattgagaacctctttgcactggctggcgacgaggaagcagaggtgcggaa
gaacgtgtgccgggcgcttgtgatgttgcttgaagcccggatggaccgcctgcttcctcatatgcacaacatagtcgagt
acatgctgcagagaacccaagaccaagatgagaatgtagctctggaggcctgtgaattctggctgactttggctgaacag
ccaatatgcaaagatgtacttgtaaggcatctaccaaagttgattcctgtgttagtgaatggcatgaagtactcagatat
agatattatcctgcttaag
 
RNA length 
979
 
Type 
nested
 
Overlapping 
 
 
Novel only 
1
 
RT-PCR confirmed 
1
 
LORF Length 
144
 
LORF-Blastp Result 
1
 
Go To Ensembl 
Go To UCSC 

Internal Id  Chromosome  Start  End  Strand  Mouse Release 
903
 
16
 
21799687
 
21800856
 
-1
 
NCBIM34
 



Longest ORF Translation Length Strand
atgatccccaagtttttacagtttttcaagcacaggagtcccaaaataag
gtctcgtgctgttgcatgtgtcaatcagttcatcatcagccggacccagg
cgctcatgctgcacatggattccttcattgagaacctctttgcactggct
ggcgacgaggaagcagaggtgcggaagaacgtgtgccgggcgcttgtgat
gttgcttgaagcccggatggaccgcctgcttcctcatatgcacaacatag
tcgagtacatgctgcagagaacccaagaccaagatgagaatgtagctctg
gaggcctgtgaattctggctgactttggctgaacagccaatatgcaaaga
tgtacttgtaaggcatctaccaaagttgattcctgtgttagtgaatggca
tgaagtactcagatatagatattatcctgctta
MIPKFLQFFKHRSPKIRSRAVACVNQFIISRTQALMLHMDSFIENLFALA
GDEEAEVRKNVCRALVMLLEARMDRLLPHMHNIVEYMLQRTQDQDENVAL
EACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL
144
+

BLASTP Hit ID (ORF) Description Score Start End Frac Aligned Query Num Hsps Frac Identical Length  
UniRef90_Q92973
Transportin-1 (Importin beta-)2 related cluster
279
1
144
1
1
0.965
890
view hsps
UniRef90_UPI0000545E10
Cluster related to UPI0000545E10; PREDICTED: simil
ar to transportin 1
265
1
144
1
1
0.896
974
view hsps
UniRef90_UPI000036132D
Cluster related to UPI000036132D
254
1
144
1
1
0.882
763
view hsps
UniRef90_UPI00004A4023
Cluster related to UPI00004A4023; PREDICTED: simil
ar to transportin 1
244
1
127
0.88
1
0.945
2147
view hsps
UniRef90_UPI0000363990
Cluster related to UPI0000363990
243
1
144
1
1
0.806
869
view hsps
UniRef90_UPI0000363992
Cluster related to UPI0000363992
243
1
144
1
1
0.806
783
view hsps
UniRef90_Q4T934
Chromosome 3 SCAF7645, whole genome shotgun sequen
ce related cluster
243
1
144
1
1
0.806
1145
view hsps
UniRef90_UPI0000364967
Cluster related to UPI0000364967
242
1
144
1
1
0.812
763
view hsps
UniRef90_UPI0000515791
Cluster related to UPI0000515791; similar to trans
portin 1; karyopherin (importin) beta 2
241
1
144
1
1
0.771
901
view hsps
UniRef90_O14787
Transportin-2 related cluster
239
1
144
1
1
0.799
897
view hsps
UniRef90_UPI0000494698
Cluster related to UPI0000494698; PREDICTED: trans
portin 2 (importin 3, karyopherin beta 2b)
239
1
144
1
1
0.799
977
view hsps
UniRef90_Q99LG2
Transportin-2 related cluster
239
1
144
1
1
0.799
887
view hsps
UniRef90_UPI00004D595B
Cluster related to UPI00004D595B
235
1
144
1
1
0.792
871
view hsps
UniRef90_UPI000058508B
Cluster related to UPI000058508B; PREDICTED: simil
ar to transportin 1, partial
234
1
144
1
1
0.771
735
view hsps
UniRef90_Q5TRB1
ENSANGP00000028987 related cluster
229
1
144
1
1
0.757
904
view hsps
UniRef90_Q4RZY5
Chromosome 18 SCAF14786, whole genome shotgun sequ
ence related cluster
228
1
144
1
1
0.812
937
view hsps
UniRef90_O76331
Transportin related cluster
217
1
144
1
1
0.729
893
view hsps
UniRef90_UPI0000584953
Cluster related to UPI0000584953; PREDICTED: simil
ar to transportin 1
209
16
144
0.9
1
0.767
701
view hsps
UniRef90_UPI00004EE112
Cluster related to UPI00004EE112; PREDICTED: simil
ar to Karyopherin (importin) beta 2b
206
1
123
0.85
1
0.797
365
view hsps
UniRef90_UPI00004D2D65
Cluster related to UPI00004D2D65
204
1
144
1
1
0.75
811
view hsps
UniRef90_Q4SQI2
Chromosome 4 SCAF14533, whole genome shotgun seque
nce related cluster
197
1
144
1
1
0.722
576
view hsps
UniRef90_UPI0000449B46
Cluster related to UPI0000449B46; PREDICTED: simil
ar to transportin 1; karyopherin (importin) beta 2
; importin beta 2; M9 region interaction protein
193
37
144
0.75
1
0.889
1108
view hsps
UniRef90_Q8MSM3
AT21921p related cluster
172
1
144
1
1
0.576
853
view hsps
UniRef90_O14089
Putative importin beta-2 subunit related cluster
166
1
144
1
1
0.528
910
view hsps
UniRef90_Q4P666
Hypothetical protein related cluster
152
1
144
1
1
0.5
924
view hsps
UniRef90_O62332
Hypothetical protein imb-2 related cluster
139
1
140
0.97
1
0.421
883
view hsps
UniRef90_Q55CQ7
Hypothetical protein related cluster
135
1
140
0.97
1
0.414
931
view hsps
UniRef90_Q5KH73
Importin beta-2 subunit, putative related cluster
123
1
144
1
1
0.424
924
view hsps
UniRef90_Q9ZVW8
Putative transportin related cluster
121
2
144
0.99
1
0.441
827
view hsps
UniRef90_Q6BV45
Similar to CA0199|CaKAP104 Candida albicans relate
d cluster
119
1
144
1
1
0.424
934
view hsps
UniRef90_Q8H2D6
Transportin related cluster
119
2
144
0.99
1
0.448
894
view hsps
UniRef90_Q9HE41
Related to IMPORTIN BETA-2 SUBUNIT related cluster
117
1
144
1
1
0.396
944
view hsps
UniRef90_Q4WRL4
Importin beta-2 subunit, putative related cluster
117
1
144
1
1
0.389
937
view hsps
UniRef90_Q4ILQ4
Hypothetical protein related cluster
113
1
144
1
1
0.389
944
view hsps
UniRef90_Q5BEV4
Hypothetical protein related cluster
105
1
144
1
1
0.368
916
view hsps
UniRef90_Q59ZG3
Hypothetical protein KAP104 related cluster
104
1
144
1
1
0.382
948
view hsps
UniRef90_P38217
Importin beta-2 subunit related cluster
94
1
144
1
1
0.382
918
view hsps
UniRef90_Q6C386
Yarrowia lipolytica chromosome F of strain CLIB99 
of Yarrowia lipolytica related cluster
90
1
144
1
1
0.306
904
view hsps
UniRef90_Q756N5
AER219Cp related cluster
90
1
144
1
1
0.361
909
view hsps
UniRef90_Q6CUK1
Similar to sgd|S0000221 Saccharomyces cerevisiae Y
BR017c KAP104 beta- karyopherin related cluster
89
12
144
0.92
1
0.338
884
view hsps
UniRef90_Q6FQQ0
Similar to sp|P38217 Saccharomyces cerevisiae YBR0
17c KAP104 beta- karyopherin related cluster
79
1
144
1
1
0.354
917
view hsps
UniRef90_UPI000049408E
Cluster related to UPI000049408E; PREDICTED: hypot
hetical protein XP_523581
64
111
143
0.23
1
0.879
483
view hsps

TrapCLuster TCL11263
Public Clones XP0216 (sanger)
Private Clones OST129073 (lexicon) OST220314 (lexicon) OST338502 (lexicon)
OST184181 (lexicon) OST271378 (lexicon) OST295239 (lexicon)
OST182189 (lexicon) OST220404 (lexicon)